Introducing Channel-Level Segmentation for Shopify Marketplace Connect

If you sell across multiple marketplaces—Amazon, eBay, Target, Walmart, and more—you know how complex it can be to keep your accounting organized and books reconciled. Shopify’s Marketplace Connect app makes it easier to manage listings and orders from one place, but until now, all those marketplace sales flowed into a single accounting summary.

That’s where Bookkeep’s latest update comes in.

Segment your sales by channel for cleaner books

With Bookkeep, Shopify Marketplace Connect users can now segment and map each marketplace to its own unique chart of accounts.

This means you can clearly see how each channel contributes to your revenue and performance—all without manual adjustments or spreadsheets.

For example:

• Amazon sales→ mapped to dedicated Amazon revenue accounts
  
  
• eBay sales → tracked separately for reporting and analysis
  
  
• Walmart sales → organized independently for clean reconciliation
  
  

This level of detail helps you:

• Simplify reconciliation
  
  
• Improve financial reporting accuracy
  
  
• Understand true profitability by marketplace
  
  

Choose the best data source for accuracy

It’s important to note that you can’t get fees and payouts for third-party marketplace orders through Shopify Marketplace Connect.

To ensure complete financial accuracy, we recommend relying on the source platform data instead.

For example:

• Use Bookkeep’s direct integrations with Walmart, eBay, and Amazon to post detailed sales, fees, and deposit data directly from each marketplace.
  
  
• Exclude these channels from your Shopify connection in Bookkeep to prevent duplicate data.
  
  

This hybrid setup ensures you’re always pulling the most accurate, source-level financial data into your accounting system.

Built for accountants and operators alike

Whether you’re a growing Shopify brand or the accountant supporting them, this update saves hours of manual work and keeps your books consistent across all channels.

Bookkeep automatically posts daily journal entries that summarize sales, refunds, fees, and deposits with precision—now enhanced by channel-level segmentation.

Get started today

If you’re already using Shopify Marketplace Connect with Bookkeep, you can configure your channels directly in your Bookkeep app settings.

👉 Learn more in our documentation

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