Partner with Bookkeep to automate accounting for your Shopify clients

Whether you build stores, implement back-office systems, or manage finances, Bookkeep helps you deliver clean books, accurate sales tax compliance, and more capacity to scale your Shopify services.

Built for the ecosystem supporting Shopify merchants

Agency Partners

Shopify Plus experts, theme developers, ecommerce consultants, and POS implementation specialists who want to offer end-to-end solutions.

App Developers & Integration Partners

App providers who want to embed Bookkeep or align on accounting + automation needs across shared Shopify users.

Accounting & Bookkeeping Firms

Practices that serve ecommerce merchants and need reliable, scalable tools for accurate Shopify accounting and sales tax compliance.

POS & Retail System Consultants

Agencies and advisors that help merchants migrate to Shopify POS and need automated reconciliation and location-level visibility.

Help your merchants succeed — and grow your firm with less manual work

Accurate, automated journal entries

Summary-level entries by day, location, channel, or payout — with support for QBO, Xero, NetSuite, and Sage Intacct.

Sales tax compliance, included

From tracking to filing and remittance — built into every Bookkeep account.

Deposit splitting by location/franchisee

Eliminate the mess of shared deposits and manual reconciliation.

COGS, BOPIS, gift cards, and more

Accounting tools that reflect how Shopify merchants actually sell and fulfill orders.

A team of ecommerce accounting experts

We're not just software — we're accountants building for accountants

Tools and collaboration for long-term growth

Partner revenue share

Earn ongoing commissions for referring merchants or bundling Bookkeep into your packages.

Joint enablement & sales support

We provide demo support, co-branded materials, and onboarding for your team and clients.

Priority support for partner accounts

Direct access to our team, with white-glove assistance for escalations and launches.

Early access & feedback opportunities

Influence our roadmap and get early visibility into new feature releases.

What Shopify merchants are saying

See how Bookkeep provides financial clarity for leading Shopify brands.
Read Case Studies
Logo shop sante
“With Bookkeep, we finally found a reliable and efficient solution to connect Shopify and QuickBooks. Managing the accounting for our franchise network is now streamlined and secure. Today, we have the peace of mind that every transaction is perfectly reconciled and that every cent is properly distributed to our franchisees. Bookkeep has become an essential partner for Shop Santé, and we highly recommend their services to any business looking for accurate and efficient accounting automation.”
eric fortier
Eric Fortier
Founder
Logo shop sante
“The closing process has gotten so much more simple because of Bookkeep. We now have real-time numbers that I’m confident are right, giving us the ability to do a lot more higher-level analysis, which is better decision-making for the business.”
eric fortier
Brian Thalman
Financial Controller
Logo shop sante
“I now can take a breath and focus on streamlining procedures, think about the culture I want my company to have, and focus on clients that are better matched for my process… I am now more focused on HR, marketing, and growth. I spend more time on my own company’s financials, which I NEVER did… I also meet with peers, partners, and potential clients in meetings throughout the day, in addition to webinars that I like to participate in.”
eric fortier
Rachel Dauchy
Owner
Logo shop sante
“One of the things I really love about Bookkeep is its compliance area. I can find everything quickly and can see exactly how the entries are calculated and booked, since it’s linked to platforms like Square or Shopify. I have no worries if there is ever an audit… No one else does this. Bookkeep works so well, I forget I’m using it!”
eric fortier
Sherri-Lee Mathers
CPB, AIA
Logo shop sante
“I would just simply recommend Bookkeep because of the confidence that it gives when your transactions are posted and it tells me to expect a payment and then the payment comes in that, that boosts my confidence. I’ve never been able to reconcile the clearing accounts and I would like to be able to do that and we’re closer now than we’ve ever been.”
eric fortier
Forrest Allen
Head of Accounting
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“All of my e-commerce clients are now on Bookkeep. Bookkeep allows me to provide transparent reports that match the sales platforms on a daily basis. It allows me the opportunity to move forward at a better speed, growing my business efficiently.”
eric fortier
Maureen Stevens
Founder
Logo shop sante
“Bookkeep has saved me hours of time dealing with our clients accepting payments from Square, Shopify, Amazon, etc. This application allows us to even grab historical data as we are wrapping up client books for tax prep. The support is superior. This is a must have tool for every accounting professional.”
eric fortier
Dawn Brolin
CPA, CFE, Owner
Logo shop sante
“My time is worth something. The free time Bookkeep is giving me is more than worth it. By saving a lot of hours each month with Bookkeep, I can work on important things. It’s an investment, not an expense.”
eric fortier
Chip Adkins
Chef/Owner