Automated accounting for retailers using Shopify POS
Bookkeep connects Shopify POS to your accounting system and automates daily sales entries, fulfillment-based revenue recognition, deposit reconciliation, and full sales tax compliance — all by location, store, or franchise.
Trusted by top ecommerce and retail Shopify brands
Shopify POS accounting without the manual cleanup
Automated Shopify POS journal entries
Accrual-based, summary journal entries posted daily to QuickBooks, Xero, NetSuite, or Sage Intacct.
Posts daily summaries — not hundreds of individual receipts
Reflects sales, returns, taxes, and tips automatically
Eliminates manual entry errors across locations
Revenue by location
Track and book revenue, COGS, and payments by store location — clean, auditable, and accurate.
Automates revenue separation across locations
Supports granular cost tracking per store
Improves visibility into store-level performance
Multi-Store Reporting
Easily separate and report on financials across multiple Shopify POS locations or retail entities.
Automates reporting by location or entity
Enables P&L roll-ups or splits as needed
Aligns perfectly with your organizational structure
Integrated sales tax support
Track and file sales tax by jurisdiction based on Shopify POS settings — no spreadsheets needed.
Calculates and books tax at the time of sale
Automates jurisdiction-level filings
Syncs with your accounting platform for audit readiness
Support your merchants with smarter financial workflows
If you’re a Shopify agency or implementation partner, Bookkeep helps your merchants automate their sales data, deposits, and tax — and saves you time during onboarding and ongoing support.
Work at Shopify? Help your merchants automate their accounting
If you're on Shopify's sales, success, or partnerships team, Bookkeep is the financial automation platform your merchants have been asking for. We automate journal entries, sales tax, and payout reconciliation — so your merchants stay happy and scale faster.
What Shopify merchants are saying
See how Bookkeep provides financial clarity for leading Shopify brands.
“With Bookkeep, we finally found a reliable and efficient solution to connect Shopify and QuickBooks. Managing the accounting for our franchise network is now streamlined and secure. Today, we have the peace of mind that every transaction is perfectly reconciled and that every cent is properly distributed to our franchisees. Bookkeep has become an essential partner for Shop Santé, and we highly recommend their services to any business looking for accurate and efficient accounting automation.”
Eric Fortier
Founder
“The closing process has gotten so much more simple because of Bookkeep. We now have real-time numbers that I’m confident are right, giving us the ability to do a lot more higher-level analysis, which is better decision-making for the business.”
Brian Thalman
Financial Controller
“I now can take a breath and focus on streamlining procedures, think about the culture I want my company to have, and focus on clients that are better matched for my process… I am now more focused on HR, marketing, and growth. I spend more time on my own company’s financials, which I NEVER did… I also meet with peers, partners, and potential clients in meetings throughout the day, in addition to webinars that I like to participate in.”
Rachel Dauchy
Owner
“One of the things I really love about Bookkeep is its compliance area. I can find everything quickly and can see exactly how the entries are calculated and booked, since it’s linked to platforms like Square or Shopify. I have no worries if there is ever an audit… No one else does this. Bookkeep works so well, I forget I’m using it!”
Sherri-Lee Mathers
CPB, AIA
“I would just simply recommend Bookkeep because of the confidence that it gives when your transactions are posted and it tells me to expect a payment and then the payment comes in that, that boosts my confidence. I’ve never been able to reconcile the clearing accounts and I would like to be able to do that and we’re closer now than we’ve ever been.”
Forrest Allen
Head of Accounting
“All of my e-commerce clients are now on Bookkeep. Bookkeep allows me to provide transparent reports that match the sales platforms on a daily basis. It allows me the opportunity to move forward at a better speed, growing my business efficiently.”
Maureen Stevens
Founder
“Bookkeep has saved me hours of time dealing with our clients accepting payments from Square, Shopify, Amazon, etc. This application allows us to even grab historical data as we are wrapping up client books for tax prep. The support is superior. This is a must have tool for every accounting professional.”
Dawn Brolin
CPA, CFE, Owner
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“My time is worth something. The free time Bookkeep is giving me is more than worth it. By saving a lot of hours each month with Bookkeep, I can work on important things. It’s an investment, not an expense.”
Chip Adkins
Chef/Owner