Financial Clarity for Shopify, Automated by Bookkeep.

Whether you run multiple locations, franchise stores, or sell across channels, Bookkeep automates your revenue recognition, deposit reconciliation and sales tax compliance with 100% accuracy.

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Trusted by top ecommerce and retail Shopify brands

Powerful automation for Shopify finance teams

Revenue Accounting Automation

Bookkeep syncs Shopify and other sales channels like Amazon and PayPal, posting clean, accrual-based summaries to your accounting system. It ensures GAAP-compliant revenue recognition at fulfillment, not just payment.

Shopify
Amazon
Toast
Paypal
Square
Stripe
Quickbooks
Sage Intacct
Net Suite
Xero
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Sales Tax Compliance

Bookkeep automates sales tax from start to finish. We file and remit across all 50 U.S. states for you. Stay compliant as you scale, backed by our dedicated sales tax specialists.

Automatically Filed
Automatically Paid
Audit-Proof

Payout Splitting, Transfers & Reconciliation

Automatically split Shopify payouts by store, franchisee, or sales channel. Bookkeep transfers funds to the right bank accounts and reconciles every deposit in your GL.

Deposit Transfers
Gift Card Transfers
Buy Online, pickup in-store transfers
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Built for every kind of Shopify business

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Ecommerce

Selling DTC online? Bookkeep automates your Shopify sales, fees, and tax entries into daily, accurate journal entries — no more reconciling manually at month’s end.
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Retail

Running a brick-and-mortar with Shopify POS? Bookkeep syncs your in-store and online sales into one clean daily entry — fully mapped and reconciled.
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Multi-Channel

Selling on Shopify, Amazon, PayPal or more? We consolidate your revenue and fees across platforms into unified, automated entries — clean and audit-ready.
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Multi-Entity

Bookkeep handles accounting for one entity or multiple all from a single Shopify store.  We can handle the complex situations and route the revenue reporting to the correct set of books.
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Franchise

Franchise structure? Our one-of-a-kind payout engine allocates Shopify deposits to each franchisee’s bank and captures franchise fees for the franchisor — automatically.
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B2B (Coming Soon)

Support for B2B Shopify stores is on the way — with proper invoicing, terms handling, and accounting for wholesale order workflows.
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Support your merchants with smarter financial workflows

If you’re a Shopify agency or implementation partner, Bookkeep helps your merchants automate their sales data, deposits, and tax — and saves you time during onboarding and ongoing support.

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Work at Shopify? Help your merchants automate their accounting

If you're on Shopify's sales, success, or partnerships team, Bookkeep is the financial automation platform your merchants have been asking for. We automate journal entries, sales tax, and payout reconciliation — so your merchants stay happy and scale faster.

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Integrations

Connect Bookkeep with your entire tech stack.

Shopify, Amazon, Toast, Square, PayPal, Stripe, QuickBooks, Xero, NetSuite, Sage Intacct
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You're not just getting software. You're getting a team.

Bookkeep is built and supported by experienced accountants, controllers, and automation pros. Whether you're running one Shopify store or 50, we’ve seen it — and solved it.
About us
team member
Jason
Co-Founder and CEO
team member
Ron
Co-Founder and CTO
team member
John
Chief Revenue Officer
team member
David
Director of Product
team member
Laurie
Director of Accounting Channels
team member
Anish
Director of Customer Care
team member
Shivam
Head of Growth
team member
Tim
Director of Revenue Operations
team member
Alta
Onboarding Specialist
team member
Ananie
Product Manager
team member
Bhupendra
Senior Software Engineer
team member
Dilip
Senior Engineer

What Shopify merchants are saying

See how Bookkeep provides financial clarity for leading Shopify brands.
Read Case Studies
Logo shop sante
“Today, we have the peace of mind that every transaction is perfectly reconciled and that every cent is properly distributed to our franchisees.”
eric fortier
Eric Fortier
Founder
wigs.com
“We now have real-time numbers that I’m confident are right, giving us the ability to do a lot more higher-level analysis, which is better decision-making for the business.”
brian thalman
Brian Thalman
Financial Controller
bohme
“I would just simply recommend Bookkeep because of the confidence that it gives when your transactions are posted and it tells me to expect a payment and then the payment comes in that, that boosts my confidence.”
forrest allen
Forrest Allen
Head of Accounting